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Exhibit 10.4

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AMENDMENT

Between

MERCK & CO., INC.

And

METABASIS THERAPEUTICS, INC.

This Amendment (this “Amendment”), effective upon the date of last signature below (the “Amendment Date”), confirms the mutual understanding and agreement between Merck & Co., Inc. (“Merck”) and Metabasis Therapeutics, Inc. (“Metabasis”) to modify certain terms of the License and Collaboration Agreement relating to AMP-activated protein kinase entered into by the parties as of June 22, 2005 and amended by the Agreement effective September 27, 2005, the Agreement effective March 22, 2007 and the Letter Agreement dated April 16, 2008 (collectively, the “Collaboration Agreement”). Unless otherwise defined, capitalized terms used in this Agreement shall have the meanings provided in the Collaboration Agreement.

WHEREAS, Merck and Metabasis desire to change certain of the milestone, royalty and patent cost payment obligations of the Collaboration Agreement;

NOW, THEREFORE, Merck and Metabasis hereby agree as follows:

 

1.

Merck shall make a one-time, non refundable, non creditable payment to Metabasis equal to US$6,000,000 within five (5) business days after the Amendment Date. In consideration for such payment, the parties hereby acknowledge and agree that no further payments shall be due from Merck under Sections 5.3, 5.4, 5.5, 5.6, 5.7 and 5.8 of the Collaboration Agreement.

 

2.

Sections 6.1, 6.2 and 6.4 of the Collaboration Agreement are hereby deleted in their entirety.

 

3.

Section 7.2(c) of the Collaboration Agreement is hereby deleted and is replaced in its entirety with the following:

(c) Metabasis Patents. Metabasis shall have the sole right to control the preparation, filing, prosecution and maintenance of Metabasis Patents (except those that are also Product Patents) using patent counsel of Metabasis’ choice. Metabasis shall give timely notice to Merck of any decision not to file applications for, or to cease prosecution and/or maintenance of, or not to continue to pay the expenses of prosecution and/or maintenance of, any Metabasis Patents on a country-by-country basis and, in such case, shall permit Merck, at its sole discretion and expense, to file or to continue prosecution or maintenance of such Metabasis Patents. Notwithstanding the preceding provisions of this Section 7.2(c), Merck shall not have the right to assume responsibility for prosecution or maintenance of any HepDirect/Carbonate Patents.”


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4.

Section 7.2(d)(i) of the Collaboration Agreement is hereby deleted and is replaced in its entirety with the following:

(i) Counsel for Joint Patents. Merck will select patent counsel at its sole discretion, either internal or external to Merck (the &ldqu


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